AutoNeuriteJ

Type
Workflow
Author
Benoit Boulan
Eric Denarier
Requires
ImageJ
Execution Platform
Linux
Mac
Windows
Implementation Type
standalone
Programming Language
ImageJ Macros
is compatible with
ImageJ
Supported image dimension
2D
Interaction Level
Automated
License/Openness
Free and open source
License
Creative Commons Attribution License
Description

An imageJ/Fiji plugin that measures and classifies neurites from a very large number of neurons.

has function
Filament tracing
Neuron image analysis
has topic
Bioimage informatics
has biological terms
neuron
neurite outgrowth measurement
Additional keywords
neurite tracing
Entry Curator
Ellie_Cho
Post date
10/28/2025 - 02:05
Last modified
10/28/2025 - 03:31
Download Page
Github (AutoNeuriteJ and a user guide)
attribution instructions
AutoNeuriteJ requires well-contrasted images of fluorescent cells and images of nuclei stained with DAPI or Hoechst, used to locate cell bodies and remove touching neurons.
Reference Publication Link
doi.org/10.1371/journal.pone.0234529
has comparison
Review Article of neuron reconstruction
Backlinks